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authorEric Dao <eric@erickhangdao.com>2023-05-12 14:09:07 -0400
committerEric Dao <eric@erickhangdao.com>2023-05-12 14:09:07 -0400
commit191e4bd8beae134295d481773823142d2fdc6a98 (patch)
treeaaca4e7f8e229f9bd551d9bb1583b8ecd7a59d4a /OASIS/docs
parent186daed7e179241377c117e9d208ccd301d4d712 (diff)
downloadura-master.tar.gz
ura-master.tar.bz2
ura-master.zip
refactored tool chain setup, able to debug and run from vscode nowHEADmaster
Diffstat (limited to 'OASIS/docs')
-rw-r--r--OASIS/docs/convert.py18
-rw-r--r--OASIS/docs/convert_bmp.py18
-rw-r--r--OASIS/docs/oasis_cross-sectional.csv437
-rw-r--r--OASIS/docs/svm_c.pngbin0 -> 23129 bytes
4 files changed, 473 insertions, 0 deletions
diff --git a/OASIS/docs/convert.py b/OASIS/docs/convert.py
new file mode 100644
index 0000000..a210088
--- /dev/null
+++ b/OASIS/docs/convert.py
@@ -0,0 +1,18 @@
+import subprocess
+import os
+
+# path to the folder containing the images
+folder_path = "/mnt/c/Users/eric/Desktop/FSEG/DPOS/"
+
+# loop through all files in the folder
+for filename in os.listdir(folder_path):
+ # check if the file is a .gif image
+ # construct the full path to the image file
+ image_path = os.path.join(folder_path, filename)
+
+ # construct the new file name, replacing .gif with .jpg
+ new_filename = os.path.splitext(filename)[0] + ".jpg"
+ new_image_path = os.path.join(folder_path, new_filename)
+
+ # call the convert command from ImageMagick
+ subprocess.run(["convert", image_path, new_image_path])
diff --git a/OASIS/docs/convert_bmp.py b/OASIS/docs/convert_bmp.py
new file mode 100644
index 0000000..05de100
--- /dev/null
+++ b/OASIS/docs/convert_bmp.py
@@ -0,0 +1,18 @@
+from PIL import Image
+import os
+
+jpeg_folder = "/mnt/c/Users/eric/Documents/repos/URA/OASIS/JPEG/DPOS"
+bmp_folder = "/mnt/c/Users/eric/Documents/repos/URA/OASIS/BMP/DPOS"
+
+# Create the BMP folder if it doesn't exist
+if not os.path.exists(bmp_folder):
+ os.makedirs(bmp_folder)
+
+# Loop over all the JPEG files in the folder
+for file in os.listdir(jpeg_folder):
+ if file.endswith(".jpg"):
+ # Load the JPEG file and convert it to BMP format
+ jpeg_file = os.path.join(jpeg_folder, file)
+ bmp_file = os.path.join(bmp_folder, os.path.splitext(file)[0] + ".bmp")
+ with Image.open(jpeg_file) as im:
+ im.convert("L").save(bmp_file) \ No newline at end of file
diff --git a/OASIS/docs/oasis_cross-sectional.csv b/OASIS/docs/oasis_cross-sectional.csv
new file mode 100644
index 0000000..9ba2029
--- /dev/null
+++ b/OASIS/docs/oasis_cross-sectional.csv
@@ -0,0 +1,437 @@
+ID,M/F,Hand,Age,Educ,SES,MMSE,CDR,eTIV,nWBV,ASF,Delay
+OAS1_0001_MR1,F,R,74,2,3,29,0,1344,0.743,1.306,N/A
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+OAS1_0003_MR1,F,R,73,4,3,27,0.5,1454,0.708,1.207,N/A
+OAS1_0004_MR1,M,R,28,,,,,1588,0.803,1.105,N/A
+OAS1_0005_MR1,M,R,18,,,,,1737,0.848,1.01,N/A
+OAS1_0006_MR1,F,R,24,,,,,1131,0.862,1.551,N/A
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+OAS1_0409_MR1,M,R,34,,,,,1569,0.798,1.118,N/A
+OAS1_0410_MR1,F,R,23,,,,,1507,0.87,1.165,N/A
+OAS1_0411_MR1,F,R,71,5,1,29,0.5,1346,0.742,1.304,N/A
+OAS1_0413_MR1,F,R,25,,,,,1447,0.866,1.213,N/A
+OAS1_0415_MR1,F,R,21,,,,,1542,0.859,1.138,N/A
+OAS1_0416_MR1,F,R,23,,,,,1567,0.852,1.12,N/A
+OAS1_0417_MR1,F,R,30,,,,,1551,0.855,1.132,N/A
+OAS1_0418_MR1,M,R,74,5,2,28,0.5,1659,0.747,1.058,N/A
+OAS1_0419_MR1,F,R,21,,,,,1473,0.862,1.191,N/A
+OAS1_0420_MR1,F,R,22,,,,,1732,0.848,1.013,N/A
+OAS1_0421_MR1,F,R,22,,,,,1655,0.847,1.061,N/A
+OAS1_0422_MR1,F,R,69,4,3,29,0,1380,0.809,1.272,N/A
+OAS1_0423_MR1,M,R,75,2,4,28,0,1511,0.749,1.162,N/A
+OAS1_0424_MR1,M,R,75,4,1,20,1,1613,0.715,1.088,N/A
+OAS1_0425_MR1,F,R,78,1,4,23,1,1461,0.715,1.201,N/A
+OAS1_0426_MR1,F,R,82,5,2,29,0,1316,0.791,1.334,N/A
+OAS1_0428_MR1,F,R,84,4,3,28,0,1500,0.751,1.17,N/A
+OAS1_0429_MR1,F,R,45,,,,,1385,0.808,1.267,N/A
+OAS1_0430_MR1,M,R,71,4,1,17,1,1562,0.687,1.123,N/A
+OAS1_0431_MR1,F,R,22,,,,,1405,0.822,1.249,N/A
+OAS1_0432_MR1,F,R,72,2,4,26,0.5,1453,0.773,1.208,N/A
+OAS1_0433_MR1,M,R,58,4,1,27,0,1606,0.779,1.093,N/A
+OAS1_0434_MR1,F,R,50,,,,,1385,0.819,1.267,N/A
+OAS1_0435_MR1,M,R,23,,,,,1766,0.82,0.994,N/A
+OAS1_0437_MR1,F,R,22,,,,,1444,0.853,1.216,N/A
+OAS1_0438_MR1,F,R,66,5,2,29,0,1191,0.787,1.474,N/A
+OAS1_0439_MR1,M,R,21,,,,,1438,0.844,1.221,N/A
+OAS1_0440_MR1,M,R,86,1,4,27,0.5,1320,0.723,1.329,N/A
+OAS1_0441_MR1,M,R,81,5,1,29,0.5,1647,0.721,1.066,N/A
+OAS1_0442_MR1,F,R,23,,,,,1431,0.847,1.227,N/A
+OAS1_0443_MR1,F,R,52,3,3,30,0,1431,0.814,1.226,N/A
+OAS1_0444_MR1,F,R,30,,,,,1250,0.86,1.404,N/A
+OAS1_0445_MR1,F,R,90,1,2,29,0,1362,0.673,1.289,N/A
+OAS1_0446_MR1,F,R,80,2,4,30,0,1390,0.748,1.263,N/A
+OAS1_0447_MR1,F,R,92,4,1,24,0.5,1388,0.739,1.264,N/A
+OAS1_0448_MR1,F,R,22,,,,,1524,0.858,1.152,N/A
+OAS1_0449_MR1,F,R,71,3,4,29,0,1264,0.818,1.388,N/A
+OAS1_0450_MR1,M,R,19,,,,,1478,0.88,1.188,N/A
+OAS1_0451_MR1,M,R,73,5,3,27,0.5,1687,0.728,1.04,N/A
+OAS1_0452_MR1,M,R,75,1,4,22,1,1656,0.762,1.06,N/A
+OAS1_0453_MR1,F,R,70,1,4,29,0.5,1295,0.748,1.355,N/A
+OAS1_0454_MR1,F,R,73,3,2,23,0.5,1536,0.73,1.142,N/A
+OAS1_0455_MR1,F,R,61,2,4,28,0,1354,0.825,1.297,N/A
+OAS1_0456_MR1,M,R,61,5,2,30,0,1637,0.78,1.072,N/A
+OAS1_0457_MR1,F,R,62,3,3,26,0,1372,0.766,1.279,N/A
diff --git a/OASIS/docs/svm_c.png b/OASIS/docs/svm_c.png
new file mode 100644
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+++ b/OASIS/docs/svm_c.png
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